Name: Jack Leary
Type: User
Company: University of Florida, UNC Lineberger CCC
Bio: Biosatats PhD student at UF. MS Biostats UF 2022, BS Stats UNC 2020. Research collaborator at Yeh Lab (UNC Lineberger CCC). Researcher at Bacher Group (UF).
Twitter: leary_jack
Location: Gainesville, FL
Blog: https://jr-leary7.github.io
Jack Leary's Projects
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Next generation sequencing pipelines that I've written.
C++ is misery, but in a good way
My personal R package
Machine learning models for diabetes diagnoses
My PHC 6088 project for my MS program at UF.
My final project for PHC 6937 (Data Visualization) for my Biostatistics MS at UF.
My Python code. I used to hate Python, but recently I've been enjoying it more!
Notes for the 2024 UF Dept. of Biostatistic qualifying exam.
My personal website
Bioinformatics analyses, class projects, etc. Mostly RMarkdown documents.
Single-Cell Analysis in Python. Scales to >1M cells.
SCISSORS builds upon the Louvain graph-based clustering in Seurat by optimizing parameter selection when reclustering cell groups, with an eye towards identifying rare cell types.
Analyses relating to the Yeh Lab's `SCISSORS` project
Simulation study for SCISSORS
Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.
analyses for the manuscript detailing `scLANE`
code and data relating to the scLANE revision
Simulation studies for scLANE
Simulation study for the scLANE manuscript
Working through McElreath's book on Bayesian statistics with R, Statistical Rethinking.
This repo contains an R package built to analyze NHANES survey data using quantile regression.
HTS Drug Discovery Analysis