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awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

cmdparser

Simple command-line parser for R

computed_manuscript

A model executable manuscript

computed_quarto_manuscript

conda-env-tests

Scripts and environment files to test computational environments with conda.

covidlit

Growth of the COVID19 literature

cvd-graphic

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

example_notebook

A sample Jupyter notebook with Binder & Colab integration

gb_read

An example GenBank file reader in Rust

holepunch_test

invoicing

A Bash invoice-tracking system for freelancers.

iscb-diversity-manuscript

Analysis of ISCB Fellows and Keynotes Reveals Disparities

jperkel.github.io

julia_on_nextjournal

GitHub backup of a Julia notebook created on Nextjournal

mapping-tools-examples

Mapping in R

mapping_tools_holepunch

mappingtoolsbinder

A simple R Markdown notebook that can be executed in RStudio using Binder

mymanuscript

Demo manuscript using Manubot

mypybioinfotools

nature_bash

Example scripts demonstrating science at the command line.

nature_code_survey

parse_command_line

A simple command line parser for R

r-novice-inflammation

Repo creates a website for the Software Carpentry introduction to R for novices using inflammation data:

rootstock

Clone me to create your Manubot manuscript

rust_in_nature

science-on-github

Resources to accompany Nature Toolbox article on Science on GitHub

sciwridiversity2020

Session notes from SciWri20 #SciWriDiversity breakout session, "Representation Matters: Better Writing Through Diversity"

snakemake_example

A Snakemake 'Hello world!' workflow

spreadsheet-ecology-lesson

This repository contains Data Carpentry lessons on using spreadsheets for data wrangling.