joshua-d-campbell Goto Github PK

bulk-rna-seq-pipeline

cel-seq

Methods for processing single cell data generated from the CEL-seq protocol

celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

comut

devel_example

Used to illustrate the principles of the software development cycle in R

develexample

A basic R package to demonstrate a cycle of code development

dna_seq

doubletfinder

R package for detecting doublets in single-cell RNA sequencing data

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

hello-world

Just another repository

liger

R package for integrating and analyzing multiple single-cell datasets

modes

:exclamation: This is a read-only mirror of the CRAN R package repository. modes — Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets. Homepage: http://www.sdeevi.com/modes_package https://github.com/sathish-deevi/modes-Package/

nf-gatk_exome_preprocess

Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data

nf-rna_seq_preprocess

rmams

R package for Matrix and Analysis Metadata Standards

sctools

shiny-directory-input

An shiny input widget for selecting directories

singlecelltk

Interactively Analyze scRNA-Seq Data

utilities

Assortment of code to perform various data processing and analysis tasks.