Comments (2)
Could you provide the command you're trying and the python version? We're using python's built in type checking, so it should work fine:
elif opt in ('-z', '--fuzzy'):
try:
fuzzy = int(arg) # Ask if var is an integer
except ValueError:
print("You provided '" + arg + "' for your fuzziness threshold, which is not an integer value")
exit(0)
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You're welcome to reopen this issue with the additional information asked for. And examples of the alleles you're expecting to see for a given read set
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