Comments (4)
Revamped openomics.readthedocs.io !
from openomics.
Thanks for pointing this out. I will fix that.
from openomics.
Looks awesome 🤩
from openomics.
I did notice that this section of the docs https://openomics.readthedocs.io/en/latest/usage/getting-started.html#creating-a-multi-omics-dataset was missing the following:
from openomics import MultiOmics
Otherwise, the following statement fails:
luad_data = MultiOmics(cohort_name="LUAD", omics_data=[mRNA, mRNA, lncRNA, som, pro])
E.g.:
Traceback (most recent call last):
File "/Users/stephenmoss/Dropbox/Code/openomics_test.py", line 39, in <module>
luad_data = MultiOmics(cohort_name="LUAD", omics_data=[mRNA, mRNA, lncRNA, som, pro])
NameError: name 'MultiOmics' is not defined
from openomics.
Related Issues (16)
- Initial Update
- AttributeError: '_io.TextIOWrapper' object has no attribute 'startswith' HOT 7
- Reviewer 1 - comment 2 - Cannot change the directory of downloaded Dataset files (using astropy) HOT 2
- Reviewer 2 - Installation instructions - Unable to install dependency HOT 2
- Reviewer 2 - Vignette - Unable to `import umap` due to dependencies with scipy on Python 3.9 HOT 2
- Reviewer 2 - Automated tests - Errors with importing dataset in generate_MiRTarBase test HOT 3
- Review 2 - Automated tests - Failed builds in Travis CI HOT 10
- Reviewer 1 - Documentation HOT 6
- Reviewer 1 - errors using the example code HOT 1
- Reviewer 1 - Installation HOT 2
- Unable to use load_data() for class Multiomics HOT 4
- Test Suite Errors HOT 1
- Bug: MalaCards integration not working because CSV is not working HOT 1
- Request: making OMIM integration
- The Creating biological interaction networks file is empty
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