Issue running HNN-Netpyne (hnn2) examples about hnn HOT 3 OPEN

Hi there,
Probably your issue isn't batch-related. I wonder what trials_0.err contains?

Things to try:

• Make sure to set showFig=True in cfg.py
  cfg.analysis['iplotRaster'] = {'include': pops, 'showFig': True, 'popColors': popColors, 'markerSize': 6, 'orderInverse': True, 'saveFig': True}

• You can also try changing matplotlib's background type if other solutions fail:
  Check (__ init __.py) inside netpyne's folder and look for 'Agg', replace it with some other type such as 'TkAgg'; see if that solves your problem.

• Add import pylab; pylab.show() inside your init.py of hnn-netpyne (often unnecessary).

from hnn.

Hi there,
Probably your issue isn't batch-related. I wonder what trials_0.err contains?

Thank you for your help @Sumayya55

Contents of trial_0.err:

In cfg.py for the neocortex model example, I found the code you're referencing between triple quotations like so. I tried removing them.

I also added import pylab; pylab.show() to the same model's init.py file, and changed 'Agg' to 'TkAgg' in netpynes init.py

Now, when running python -i init.py (hnn-netpyne's init.py) directly, I get the plots, which is progress! But when running python -i plot_simulate_alpha.py, I get stuck at the same spot here, with the same trials_0.err file and no plots:

from hnn.

Based on the .err output the issue seems to come from " file" not defined. However, I am unable to reproduce on my Mac OS, so this might be a Windows-specific error. If you can find any more information about the error, that would be helpful. Otherwise, we will try to reproduce the error on a Windows machine and get back to you.

from hnn.