Comments (4)
It's a good point about Sarah. Due to her busy grad school life, I'm not sure she will get to publishing the paper and we may need to bring in another person to finalize. It's an exciting and important paper!
Two concerns:
- The new GUI should use the Kohl_2022 model, and as such this becomes the new "default" that the community will use. I've been encouraging anyone using the old GUI to import the new calcium, and this is now standard practice in our lab and in collaborations.
- I'd like to establish a standard naming convention for new models that are developed and used in HNN workflows. Particularly, as we develop a framework for importing Netpyne models.
Let's leave this issue open and discuss at our next HNN meeting. Perhaps a strategy could be to see where we are at in the paper publishing once the new GUI and is associated tutorials are finalized.
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its Kohl_2021, not 2022
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If I recall correctly, we were originally waiting for Sarah to publish her paper so that she'd get credit for the model when we rename it with our "author_year" naming convention. Do you think we should rename it now as "kohl_2021" or wait for Sarah's paper? Once we rename it, I'd hesitate to ever change it in order to provide API consistency as well as publication consistency since users will start associating the HNN-core template model with a specific paper (maybe they already do though...).
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We don't have a "default" model per se, do we? We just import the model in an example and use it ... so it would just be a matter of updating the docs and nothing to change in the API?
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Related Issues (20)
- [JOSS] Software Paper HOT 2
- pre-allocate arrays for storing continuous simulation data in network_builder.py
- issue with GUI install
- GUI does not show dipole plots HOT 2
- installation on m2 mac HOT 1
- [BUG] `plot_dipole` not showing in GUI with `matplotlib>=3.8.0` HOT 9
- tests: add axis data checks for all plots available in GUI HOT 2
- BUG: Deleting drives in GUI after file upload prevents loading of the same file HOT 1
- GUI callbacks error messages are not logged
- GUI loading params from hdf5 HOT 1
- GUI export network to hdf5 button
- GUI RSME annotations on dipole plots
- GUI plot sets
- GUI cell parameters
- GUI new tutorial input files
- GUI plotting observed data on PSD plot
- GUI tonic inputs HOT 5
- GUI synchronous Inputs HOT 3
- BUG (GUI): Dipole plot scaling HOT 13
- GUI exporting simulations to csv HOT 6
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