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affinder-drag

Quickly find the affine matrix mapping one image to another using manual correspondence points annotation

apw

Small and simple Awesome WM widget to control volume of Pulseaudio.

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

cistem

contrasttransferfunction

A python library to model and estimate the contrast transfer function of transmission electron microscopy data

cryoem-class

A test repository for a cryo-em class

cryojax

Cryo electron microscopy image simulation and analysis built on JAX.

deco_lace_template_matching_manuscript

The manuscript describing Defocus Corrected Large Area cryo-EM (DeCo-LACE) for 2DTM

decolace

Scripts for acquiring DeCo-LACE data using SerialEM

decolace_web_viewer

docker-awesome-desktop

Docker Desktop enables you to create virtual desktops that can be accessed remotely. It comes with Firefox and Libreoffice already installed!

dsn6file

gcc-problem-matcher

Github Action to problem match gcc output

hexalyzer

imodmodel

IMOD model files as pandas dataframes in Python

ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

jojoelfe.github.io

jsav

JavaScript Sequence Alignment Viewer

jupyter-book

Build interactive, publication-quality documents from Jupyter Notebooks

mdocfile

SerialEM mdoc files as pandas dataframes

mmass_hdx

Modifications to mMass for HDX analysis

molecularnodes

Addon and nodes for working with structural biology and molecular data in Blender.

molintjs

mpld3

Experimenting with d3 renderings for matplotlib plots

mzml.js

A mzml viewer written in Javascript using d3.js

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-cistem

A napari plugin to inspect data within a cisTEM project

napari-cistem-mtselector

napari-cryofibsem-monitor

A plugin to monitor the creation of lamella using AutoTEM on a TFS Acquilos instrument

napari-decolace