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1000-genomes

Annotations of SNPs identified in the 1000 Genomes Project

1000-genomes-genetic-maps

Genetic maps interpolated to sites in the 1000 Genomes project

1000g-server

test test test

2016-01-tennis-betting-analysis

Methodology and code supporting the BuzzFeed News/BBC article, "The Tennis Racket," published Jan. 17, 2016.

ancestry-paper

aviary

custom_db

Custom db script for DNA.land

cxxsquarem

A C++ version of the R Package "SQUAREM"

eagle

Haplotype phasing software

exac21

faststructure

A variational framework for inferring population structure from SNP genotype data.

fgwas

Functional genomics and genome-wide association studies

fgwas-sims

Simulations for fgwas

fig1

genome-client-21

genome-server-21

Serve your genotypes and phenotypes via an API for satoshis

glimpse

Low Coverage Calling of Genotypes

glphase

A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples

graph-genotyping-paper-pipelines

Collection of Snakefile Python scripts for the variant discovery and genotyping pipelines in cattle

gvcftools

Utilities to create and analyze gVCF files

gwas-pw

Pariwise analysis of GWAS

gwas-pw-paper

htslibpp

C++ wrapper for the htslib C library

ion-tree-list

Ionic directive for displaying nested list items.

kraken

Kraken taxonomic sequence classification system

ldsc

LD Score Regression (LDSC)

lift-over-vcf

UCSC liftOver (genome build converter) for vcf format

malder

Automatically exported from code.google.com/p/malder

marvin

minimac3

Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy.