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.config

NeoVim configuration optimized for writing in LaTeX

advent_of_code_2023

aics-ml-segmentation

biol219_tutorial

c_polymer

colocalization

cooltools

The tools for your .cool's

cpolymer

diffusive_distinguishability

Simulation of homogeneous diffusion, bayesian estimation of underlying diffusion constant, and analysis of distinguishability between diffusivity estimates

etch_a_sketch

Rudimentary etch a sketch using JavaScript/jQuery

general_monty_hall_sim

Generalized Monty Hall Simulator

image_cross_correlation

kickstart.nvim

A launch point for your personal nvim configuration

mcgill-thesis-template

nobias

Matlab code for running the NOBIAS algorithm which applies nonparametric Bayesian statistics and deep learning approaches to quantify dynamics and assesses anomalous diffusion in single-molecule tracking datasets. From Chen et al, submitted (2021)

phys657_project_2

Mini-inclass project for PHYS657

pix2text

An Open-Source Python3 tool for recognizing layouts, tables, math formulas (LaTeX), and text in images, converting them into Markdown format. A free alternative to Mathpix, empowering seamless conversion of visual content into text-based representations. 80+ languages are supported.

polymer_weberlab

rapidstorm

rapidSTORM open-source localization microscopy software

single_particle_analysis

smaug

Matlab code for running the SMAUG analysis for Karslake and Biteen, Methods (2021) https://doi.org/10.1016/j.ymeth.2020.03.008

sms_bp

Single Molecule Localization Microscopy, Tracking Simulations for Baljyot Parmar at the Weber Lab. Montreal, QC.

supersegger

A completely automated MATLAB-based trainable image cell segmentation, fluorescence quantification and analysis suite, particularly well suited for high-throughput time lapse fluorescence microscopy of in vivo bacterial cells.

u-track

Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events

vbsptu

Analysis of single particle tracking data with localization errors.

workshop0

Repo for lab workshop on Git