jmeppley Goto Github PK

academicpages

My personal website, forked from academicpages/academicpages.github.io

anvio

An analysis and visualization platform for 'omics data

batch_launcher

Python script to fragment tasks for parallel execution

bats.vim

Syntax highlighting for Bats - Bash Automated Testing System

bbcp

Securely and quickly copy data from source to target.

bioblend

A python library for interacting with CloudMan and Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

bottle-feedstock

A conda-smithy repository for bottle.

cherrypy-feedstock

A conda-smithy repository for cherrypy.

concatemer_finding

Flags sequences that are entirely composed of tandem repeats

connectionpool

Thread-safe connection pool

db-build-microeuks

Documentation to build databases for 18S tag-sequencing or metaT/G work

deepvirfinder

Identifying viruses from metagenomic data by deep learning

docker

dtr-phage-pipeline

du_histogram

Simple ASCII histogram of du (disk usage) output

dynamic_remote_snake

Dynamically make files in snakemake workflows remote only if they are a URL or match a pattern

eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

gggenomes

A grammar of graphics for comparative genomics

graftm

GraftM - Rapid community profiles from metagenomes

jmeppley-conda

My personal conda recipes

jmeppley.github.io

Build a Jekyll blog in minutes, without touching the command line.

jupy_tools

A collection of assorted code that I keep coming back to

mags_from_separate_assemblies

This is Andy's workflow for finding MAGs in assemblies from separate samples including merging multiple binning tools with DAS_Tool and merging duplicate MAGs with dRep.

mesoscope_mt_counts

scripts for Uri

mpld3

Experimenting with d3 renderings for matplotlib plots

mplexporter

A proof of concept general matplotlib exporter

np_read_clustering

pandas-feedstock

A conda-smithy repository for pandas.

planets