jlevy44 Goto Github PK

airlab

Image registration laboratory for 2D and 3D image data

arcticai

See application demo: https://arcticai.demo.levylab.host.dartmouth.edu/

autoparisx

bridgecategorystagingmodels

chocolate

A fully decentralized hyperparameter optimization framework

circos_dropper2

circosdropper

Automated visualization of pairwise synteny

clam

Data Efficient & Weakly Supervised Computational Pathology on Whole Slide Images

colon_protein_dsp_study

datasets

Repository to store datasets for variety of my publicly released packages.

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

dgm

Deep Graph Mapper: Seeing Graphs through the Neural Lens

dh_pressure_injury_prediction

gae-pytorch

Graph Auto-Encoder in PyTorch

gcn4r

GCN4R Package

graphrnn

he2tri

hypopt

A Python ML package for parallelized hyper-parameter optimization using a validation set (not cross validation).

interactiontransformer

Extract meaningful interactions from machine learning models to obtain machine-learning performance with statistical model interpretability.

joshua-levy-synteny-analysis

Integrated Analysis of Synteny (Multiple Synteny Comparison for Multiple Alignment, Circos Outputs, Allmaps Genome Reconstructions), Find Ghost Genes, Identify and Analyze CNS Elements from Multiple Alignment Files and More!

joshuatree

Using pairwise synteny for high throughput genomics, multiple sequence alignment, population genetics, and phylogeny

joshuatree2

High throughput scaffolding and phylogenetic inference pipeline from syntenic blocks.

jupytertests

learningscripts

Scripts I wrote when I first learned python

levylab

Levy Lab Website: https://jlevy44.github.io/levylab/

medstudent_resident_informatics_tutorials

meffil

Efficient algorithms for analyzing DNA methylation data.

meml_colon_dsp_mets

methylcapsnet-1

methylnet

Modular framework for deep learning predictions on methylation data.