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biojava

BioJava is an open-source project dedicated to providing a Java framework for processing biological data.

biojava-tutorial

A tutorial for BioJava

bridgedb-app

BridgeDb App for Cytoscape 3

cbioportal

cbioportal-frontend

React Frontend of cBioPortal :tada:

cbioportal_search

cBioPortal Search Prototype

chart-doctor

Sample files to accompany the FT's Chart Doctor column

coda

cythesaurus

CyThesaurus (ID Mapping) Plugin for Cytoscape

genome-nexus

Interpreting cancer genomics data

genome-nexus-annotation-pipeline

hotspots

Identifying recurrent mutations in cancer

markdown-toc

MarkdownTOC(Table Of Contents) Plugin for Visual Studio Code.

mmtf-spark

Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.

mmtf-workshop-2017

Structural Bioinformatics Training Workshop & Hackathon 2017

mutantpdb

mutationhotspots

Algorithms to detect mutational hotspots

obo-parser

OBO Parser

oncokb

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

pcviz

Pathway Commons Bio Network Visualizer

plotly.js

The open source javascript graphing library that powers plotly

threecolumnstomatrix

Converting three column data to a matrix

uniprotpyutils

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

workbench

A community shared resource of Python and R Notebooks that utilize the cBioPortal API for various analysis recipes

you-dont-know-js

A book series on JavaScript. @YDKJS on twitter.