Comments (2)
Hello JB,
You closed the issue - does this mean you resolved your problem? Thank you for including the files, it looks indeed like a formatting error. When reading in the genotype data as follows, sequoia runs without problem:
GM <- read.table("geno2_debug.txt", header=T, row.names=2)
GM <- as.matrix(GM[,-1])
I'd like to let you know that I'm working on an update of sequoia, with some added features which could be useful to you. It should hopefully be available on CRAN by the end of next week. After some tweaking it has a better assignment rate for datasets with many individuals of unknown age and sex. It also finds parent-parent-offspring trios among the list of likely relatives where both parents are of unknown sex.
Kind regards,
Jisca
from sequoia.
from sequoia.
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