jim-bo Goto Github PK

academic-kickstart

Easily create a beautiful website using Academic and Hugo

airflow-repo-template

The easiest way to run Airflow locally, with linting & tests for valid DAGs and Plugins.

cancer-privacy-statements

A repository of my survey of privacy statements from various entities measure biomarkers for cancer patients.

cbionotebooks

Cancer biology ipython notebooks

compose-services

Deploy Gen3 using Docker compose

dimwit

dimension reduction survey

docker-build-nodejs

featurebin

A tool for working with gene feature files, and SAM files.

hotspot_logreg

Logistic regression for hotspot detection

immuno-mark

A small application to facilitate markup of multi-channel images

jim-bo.github.io

blog about my interests

jupyter-mantis

learngitlfs

temporary repository to learn gitlfs

material2-app

Simple app that consumes Angular Material 2 components

mirid

miRNA identification pipeline

nextgenscripts

A collection of code used in analyzing and organizing high throughput DNA sequencing data.

notebooks

Bioinformatics notebooks

oncotreenx

light networkx wrapper around the oncotree data structure

parabio

Parallelization code for common easily parallelized bioinformatics tools

pythologist

Read files from inForm software by PerkinElmer

python_tutorial

Intro to Python tutorial for Department of Data Science at DFCI

quarto-web

Quarto website

rq

Simple job queues for Python

scafathon

Genome scaffolding comparison framework

scdecon

single-cell assisted gene expression deconvolution

scikit-image

Image processing in Python

silp2

Scaffolding using Integer Linear Programming

sinah

whole genome scaffolding

spatial-review

repository of my random walk through spatial genomics and proteomics methods.

textclassifier

Text classifier for Hierarchical Attention Networks for Document Classification