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Jianing Xi's Projects

annotables icon annotables

R data package for annotating/converting Gene IDs

deeplearntoolbox icon deeplearntoolbox

Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.

deepthought icon deepthought

a library for decoding brain activity using deep learning

dgpathinter icon dgpathinter

a novel model for identifying driver genes via knowledge-driven matrix factorization with prior knowledge from interactome and pathways

driversub icon driversub

Inferring subgroup specific driver genes from heterogeneous cancer samples via subspace learning with subgroup indication

filenameasdate icon filenameasdate

This script renames files and directories in a specified directory according to a specific set of rules. It cleans the names by replacing certain characters, removes duplicate underscores, and prepends the last modification date to the names. Temporary directories are created and used to facilitate the renaming process.

folderdirectorysummary icon folderdirectorysummary

This script generates a summary of the contents of a specified directory and saves it to a text file.

heic2png icon heic2png

This script converts all HEIC images in a specified folder to PNG format using ImageMagick and then deletes the original HEIC files.

humandreamdecoding icon humandreamdecoding

Codes used in "Neural decoding of visual imagery during sleep" by Horikawa et al (Science, 2013, http://science.sciencemag.org/content/340/6132/639.long)

intdriver icon intdriver

Discovering potential driver genes through an integrated model of somatic mutation profiles and gene functional information

learningpancancergene icon learningpancancergene

A novel unsupervised learning model for detecting driver genes from pan-cancer data through matrix tri-factorization framework with pairwise similarity constraints

massiveimagestitching icon massiveimagestitching

This repository contains three Python scripts for various utility purposes: directory summary generation, image combination, and image margin cutting.

matlab_image_webp2png icon matlab_image_webp2png

The MATLAB_Image_Webp2PNG project contains a series of MATLAB and batch scripts designed to batch convert WebP images to PNG format and perform other image processing operations. This project is suitable for users who need to perform image format conversion and batch image processing in the MATLAB environment.

mcgfinder icon mcgfinder

A novel network regularized matrix decomposition method to detect mutated cancer genes in tumour samples with inter-patient heterogeneity

pdfcombinewithmenu icon pdfcombinewithmenu

This project provides a Python script for organizing PDF files and images into a directory structure based on their folder and file names. It also adds footers with page numbers of the same size to the first page or all pages of the PDFs and images.

pdfscanfrontbackmerge icon pdfscanfrontbackmerge

This project provides a Python script for merging the front and back pages of PDFs scanned with a printer that does not support duplex scanning. The script combines the pages in the correct order to produce a complete PDF document.

rs-expnet-crnmf icon rs-expnet-crnmf

Discovering mutated driver genes through a robust and sparse co-regularized matrix factorization framework with prior information from mRNA expression patterns and interaction network

seqgan icon seqgan

Implementation of Sequence Generative Adversarial Nets with Policy Gradient

webp2png icon webp2png

This script converts all WebP images in a specified folder to PNG format using Pillow and then deletes the original WebP files.

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