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ai4bio_paper_reading_list

List of latest/classical papers about AI for Biology. Beginning in 2023. Present emphasis on Protein.

algorithm2022_teamwork

alphafold_finetune

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions

assessment-ii

Predicting the binding of peptide and HLA Class I

conts-tois-2021

pmtnet

Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

prottrans

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

tcrai

tcrdock

python tools for TCR:peptide-MHC modeling and analysis