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16srdna_analysis_system

analysis_of_microbiome_community_data_in_r

This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/

arriba

Fast and accurate gene fusion detection from RNA-Seq data

bigrquery

An interface to Google's BigQuery from R.

calendr

Ready to print calendars with ggplot2

cbioportal

cBioPortal for Cancer Genomics

cellchat

R toolkit for inference and analysis of cell-cell communication from single-cell data

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

cis-x

Search for activating regulatory variants in the tumor genome

clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

clonex

Efficient Wright-Fisher simulations for intra-tumour population genetics

co-fuse

Co-fuse: a recurrent fusions identification and analysis tool based on RNA-sequencing

complexheatmap

Make Complex Heatmaps

cuttag_tutorial

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

deconstructsigs

deconstructSigs

diabetes_classifier

diabetes_classifier

drap

DRAP is an R package for drug response analysis and visualization tailored for preclinical drug testing on patient-derived xenograft models.

dysregsig

Implement gene dysregulation analysis and construct mechanistic signature in cancer

f1000_workflow

facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

free_r_tips

Free R-Tips is a FREE Newsletter provided by Business Science. It comes with bite-sized code tutorials every Tuesday.

g3viz

Lollipop-diagram to interactively visualize genetic mutations

garnett

Automated cell type classification

gephi-tutorials

Open and collaborative tutorials for Gephi

ggcharts

Get You to Your Desired Plot Faster

ggchicklet

🀫 Create Chicklet (Rounded Segmented Column) Charts

ggdist

Visualizations of distributions and uncertainty

ggord

a take on ordination plots using ggplot2

ggsashimi

Command-line tool for the visualization of splicing events across multiple samples