Name: Jon Haitz Legarreta Gorroño
Type: User
Company: Brigham and Women's Hospital, Mass General Brigham/Harvard Medical School
Bio: Postdoctoral research fellow interested in diffusion MRI, tractography, deep learning, computational neuroanatomy and reproducible scientific research
Location: Boston, MA, USA
Blog: https://jhlegarreta.github.io/
Jon Haitz Legarreta Gorroño's Projects
How to 3D print your brain from a T1 MRI image.
GitHub Actions for use in Carpentries-style lessons
Automated Fiber Quantification
Yet another alternative curriculum vitae/résumé class with LaTeX
Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
White matter bundle segmentation as Anatomically-Informed multiple Linear Assignment Problems (multi-LAP-anat).
autoDTI is a fully-automated, stage-configurable, and massively-parallel pipeline for conducting rapid and comprehensive single-subject analysis of diffusion magnetic resonance imaging (dMRI)
Automatic Tractography Tool
A curated list of awesome CMake scripts, modules, examples and others.
BART: Toolbox for Computational Magnetic Resonance Imaging
A Python implementation of global optimization with gaussian processes.
Towards Deep Learning for Connectome Mapping: A Block Decomposition Framework
BEP016: diffusion derivatives
Extract the metadata from a BIDS dataset
Brain Imaging Data Structure (BIDS) Specification
Web-based visualization tools for neurological data.
Template for creating attendance certificates for Brainhack
A Jupyter Book of everything Brainhack: past, present and future.
brainhack events webpage
Event project requirement-contributor request matching toolkit
Implementation of "Data augmentation with spatial and appearance transforms for one-shot medical image segmentation"
Project issue to website data transformation toolkit
Tools for analysis of brain imaging-derived networks, based on NetworkX
A business card in LaTeX.