jgi-bioinformatics Goto Github PK
Name: JGI
Type: Organization
Location: Walnut Creek, CA
Blog: www.jgi.doe.gov
Name: JGI
Type: Organization
Location: Walnut Creek, CA
Blog: www.jgi.doe.gov
Dockerfile for the Albacore basecaller from Oxford Nanopore
Open source code for AlphaFold.
Axolotl is a Python library for scalable genome analysis, addressing the gap in tools for handling the rapid growth of genomic data with easy parallel processing.
Feature testing for command line tools
A container for Berkeley UPC.
efficient arrays of booleans for Python
A single molecule sequence assembler for genomes large and small.
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Modified fork of CURRENNT https://sourceforge.net/projects/currennt/
Double Affine Smith-Waterman on CPU
A scalable OpenMPI runtime container for Docker
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html
Formulae for bioinformatics NERSC installs
MPI version of Sparc
repository for notebooks used in the JGI data science training series
A standalone and lightweight C library
An MPI Toolkit for large-scale genomic analysis
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Experimental tool to find approximate mapping positions between long sequences
A fast pairwise aligner for genomic and spliced nucleotide sequences
Real time data analysis tools for the minION sequencing platform.
First generation RNN basecaller
Signal-level algorithms for MinION data
SV caller for nanopore data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.