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analysis

Analysis of inference methods on standard population models using Snakemake

autodiff-experiments

automatic/analytical differentiation benchmark

bgmp-internship-reports

A place for my three internship reports to live.

deduper

demultiplexing-jgallowa07

demultiplexing-jgallowa07 created by GitHub Classroom

diploshic

dotfiles

Dotfiles and automagic set-up scripts for Linux flavours

example-phip-plow

falcon_crab_assemblathon

This repository will contain the necessary scripts and computational benchmarks for the assembly of the King Crab.

filecrawler

This is the source code for a muti-threaded file crawler written in c using p threads.

habitatcorrectednetwork

a python module for calculating microbial correlation matrices that account for habitat filtering effects

hipposhic

Testing out uploading to pyPI

human-robot-simulation

A fun simple game that lets the user or a file 'create' command to make a world (required first), Humans, Robots, Waypoints, and fires. Use move, go, and attack to take out the fires and move.

idp

A place for Individual Development Plan

idp-template

individual career development plan

imagefiltercpp

a source - sink hierarchy takes in PNM files, applies filters by directly manilating each pixel.

manuscript

PopSim consortium manuscript

motif-mark

A simple CLI to draw motif plots given a fasta and motif file.

msprime

A reimplementation of Hudson's classical ms simulator for modern data sets.

ncov-dms-model

A modified ncov nextrain build to include dms model predictions'

neuron-image-analysis

This repository will hold code and other documents for doing image analysis (deep learning) to identify specific neurons.

nextflow-example

A small example of how to start building a nextflow pipeline.

olmsted

B-cell repertoire and clonal family tree explorer

partis

B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction

portfolio

A portfolio for my CV / Resume / example figs ect.

pyslim

Tools for dealing with tree sequences coming to and from SLiM.

relernn

Recombination Landscape Estimation using Recurrent Neural Networks

resume-cv

A place to be a *little* self-centered.

ringo

blah

roundrobinscheduler

This is a model of a round robin CPU scheduler. It takes in a number of commands as an argument, forks off children processes to exec the given command in a round robin scheduling fashion