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bioinfo-workflows

Bioinformatics workflows and extensions for workflow inference compiler

cmol

This is a mono-repo of various molecular dynamics projects from The Lewis Group at WVU. http://fireball.phys.wvu.edu This code is from ~2006-2010.

cwltool

Common Workflow Language reference implementation

ddm-random-matrices

This is research code that was used to calculate / predict the mass spectra of a Dynamical Dark Matter ensemble in the publication of https://arxiv.org/abs/1601.05094

haskelltalk

This is the code for my series of introductory haskell talks.

image-workflows

mm-workflows

Molecular modeling workflows and extensions for workflow inference compiler

rocket_control

A simple orbital rocket trajectory simulator, for designing exotic variants of the SpaceX Starship architecture.

squadron

This is a collection of scripts for use with the monte carlo particle physics event generator MadGraph5 (https://launchpad.net/mg5amcnlo). This is research code that was intended to be the successor / sequel to https://arxiv.org/abs/1109.6014

timeseriesplots

Tools for analyzing and plotting timeseries data in realtime

toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

typogenetics

This is an implementation of Typogenetics, from Gödel, Escher, Bach (pg 504).

waterdata-usgs

This is a collection of utilities for working with the realtime streamflow timeseries data provided by the USGS at https://waterservices.usgs.gov/rest/IV-Service.html

workflow-inference-compiler

A domain specific language for creating scientific pipelines

workflow_inference_compiler

DSL for inferring the edges of a CWL workflow DAG, with examples in molecular dynamics