jessicachung Goto Github PK

arduino_sketches

bioconda-recipes

Conda recipes for the bioconda channel.

bionitio-r

Demonstrating best practices for bioinformatics command line tools

biotool

Proverbial biotool implemented in multiple languages

endest

Estimate uterine cycle time using endometrium expression data

endo_model_paper

endspect

galaxy_stats

generate_count_matrix

Tool to generate a count matrix for expression data in Galaxy

git-workshop

gvl_image_playbook

Playbook for building the Genomics Virtual Laboratory

hatch

Plot CSV or TSV files on the command line

ifb_workshop

Ansible playbook to install software for the IFB workshop (Summer School Genopole 2017)

melbioinf_docs

LSCC documentation in markdown format

misc_gvl_documentation

My personal notes for the GVL project and managed GVL servers

mivf_shiny_apps

pipeline_base

Infrastructure for bioinformatics pipelines based on Ruffus

pylazybam

A pure python lazy BAM parser

qiime2r

Import qiime2 artifacts to R

r-intro-biologists

rna_seq_pipeline

rnapipe

Pipeline for RNA-seq

rnaseq-r

RNAseq analysis in R workshop, originally taught: http://combine-australia.github.io/2016-05-11-RNAseq/

ruffus

Ruffus is a lightweight python module for running computational pipelines.

scrapers

Various web scrapers

shiny_examples

Examples of R Shiny applications.

test

This is a test repo

test-git

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission