Comments (4)
I just confirmed that the output from ust does not have Ns. I also confirmed that the output from ust only has capital letters.
from lphash.
Hello,
I do not get the error you mention. Here is what I did.
./bcalm -in GCA_000146045.2_R64_genomic.fna.gz -kmer-size 31 -abundance-min 1 -nb-cores 8
./ust -k 31 -i ~/bcalm/build/GCA_000146045.2_R64_genomic.fna.unitigs.fa
./lphash build-p -i ~/UST/GCA_000146045.2_R64.ust.k31.fa.gz -k 31 -m 15 -o test.lphash -d tmp --verbose --check
./lphash query-p -i test.lphash -q ~/UST/GCA_000146045.2_R64.ust.k31.fa.gz
Are you sure you did something similar? What exactly are you querying?
from lphash.
My apologies, the error was on my end. I had edited the code and that is what had caused the error. I'm sorry for wasting your time.
from lphash.
@tbenavi1 No worries at all! I'm glad to help. Should you need my assistance, do not hesitate to ask.
Cheers,
-Giulio
from lphash.
Related Issues (8)
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from lphash.