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tbenavi1 avatar tbenavi1 commented on September 26, 2024

I just confirmed that the output from ust does not have Ns. I also confirmed that the output from ust only has capital letters.

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jermp avatar jermp commented on September 26, 2024

Hello,
I do not get the error you mention. Here is what I did.

./bcalm -in GCA_000146045.2_R64_genomic.fna.gz -kmer-size 31 -abundance-min 1 -nb-cores 8

./ust -k 31 -i ~/bcalm/build/GCA_000146045.2_R64_genomic.fna.unitigs.fa

./lphash build-p -i ~/UST/GCA_000146045.2_R64.ust.k31.fa.gz -k 31 -m 15 -o test.lphash -d tmp --verbose --check

./lphash query-p -i test.lphash -q ~/UST/GCA_000146045.2_R64.ust.k31.fa.gz

Are you sure you did something similar? What exactly are you querying?

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tbenavi1 avatar tbenavi1 commented on September 26, 2024

My apologies, the error was on my end. I had edited the code and that is what had caused the error. I'm sorry for wasting your time.

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jermp avatar jermp commented on September 26, 2024

@tbenavi1 No worries at all! I'm glad to help. Should you need my assistance, do not hesitate to ask.
Cheers,
-Giulio

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