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Greg Slodkowicz's Projects

homebrew icon homebrew

:beer: The missing package manager for OS X.

msa icon msa

R package for multiple sequence alignment

pipeline-transcriptome-de icon pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

pyranges icon pyranges

(beta) Performant Pythonic GenomicRanges

slr icon slr

Sitewise Likelihood Ratio technique for detecting non-neutral selection

slr_pipeline icon slr_pipeline

Pipeline for mapping SLR results for Eutheria onto the available structures from PDB

swmutsel icon swmutsel

Implementation of the site-wise mutation-selection model (swMutSel) described in Tamuri et al. Genetics. (2012, 2014)

tdg09 icon tdg09

Software and data used in Tamuri AU, dos Reis M, Hay AJ, Goldstein RA (2009) Identifying Changes in Selective Constraints: Host Shifts in Influenza. PLoS Comput Biol 5(11): e1000564 doi:10.1371/journal.pcbi.1000564

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