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amplicontig

Extract Illumina read pairs that exactly match primer sequences

amygda

Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

bio-seq

Bit packed and well-typed biological sequences

bio-seq-derive

Procedural macros used by bio-seq

bio-streams

Streaming iterators for bioinformatics data

bioinformatics-toolkit

A collection of bioinformatics algorithms

cbgb

Coloured de Bruijn Graph Builder

clockwork

CRyPTIC data processing pipelines

colour-poa

coloured partial order alignment

covid-sequence-analysis-workflow

covid-workflow-manager

epitran

A tool for transcribing orthographic text as IPA (International Phonetic Alphabet)

genetracks

Diagrams for genomic sequences

hts-pure

Library for manipulating next generation sequencing data

jeff-k.github.io

kmers

A bit-packed k-mer representation (and relevant utilities) for rust

lines-are-rusty

Rust File API for the reMarkable tablet

merge-mates

Trim and merge mated forward-reverse read pairs

ngs-sim

Synthetic next-generation sequencing data with artefacts

noodles

Bioinformatics I/O libraries in Rust

pyrustbio

Python bindings for rust

pyvcf

A Variant Call Format reader for Python.

pyvdrm

Tools for interpreting viral drug resistance mutations

resolvepairs

Resolve pair information for ambiguously named reads when converting SAM to FASTQ

rs-gfa

GFA parser in Rust

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-bio-types

A library of common biomedical types.

rust-debruijn

De Bruijn graphs in Rust

sars-cov2_workflows