Comments (1)
I will not be removing the format argument from Caltha. It would mean to much hard coding and catching of possible file formats.
I have however, in the process of exploring this, added pyfastx, which now makes the zipfasta & zipfastq format arguments obsolete and allows for gzipped fasta and fastq files as input (or gzipped in a zip archive).
See this PR: #12
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Related Issues (8)
- Allow one mismatch in primer/adapter search. HOT 2
- Add parallel processing to Caltha. HOT 1
- Produce zip file of VSEARCH clustering output. HOT 1
- Check errors occuring when input is in fastq format. HOT 1
- Remove UMI SEQ and Centroid Read from tabular output. HOT 1
- Trim primers/UMI from BLAST file reads.
- Add a UMI block count analysis. HOT 1
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