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2010_python_class

2017_2018-single-cell-rna-sequencing-workshop-ucd_ucb_ucsf

2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF

asap_reproducibility

Reproducing all analyses and figures for the ASAP-seq paper

asap_to_kite

CL python script to reformat CITEATAC fastqs for kite (kallisto | bustools) processing

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

bashscripting-2874016

Learning Bash Scripting

bioinformatics

Code inspired by Bioinformatics Algorithms: an Active Learning Approach.

book

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

cheatsheets

Official Matplotlib cheat sheets

cheatsheets-1

RStudio Cheat Sheets

colorblindr

An R package to simulate colorblindness on R figures.

compgenomrdata

Data for book

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

complete-python-bootcamp

Lectures for Udemy - Complete Python Bootcamp Course

crop-seq

Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

dataviz

A book covering the fundamentals of data visualization

de-analysis-basic-tutorial

This repository contains a basic tutorial on performing differential expression analysis using r and the Bioconductor package.

dsb

Normalize CITEseq Data

dviz.supp

Supporting materials for Claus Wilke's data visualization book

exercises

genepi-book

gggenomes

A grammar of graphics for comparative genomics

hello-world

Test

inspiration4-omics

Scripts run during processing and analysis of Inspiration4 omics data.

logomaker

Software for the visualization of sequence-function relationships

metamaps

Long-read metagenomic analysis

mgatk

mgatk: mitochondrial genome analysis toolkit

mitoclone

monocle3