janedy Goto Github PK

bio_code

this project is content about my bioinformation analysis code .it may have R，Shell，Python.

blast2lca

Calculates the lowest common ancestors of each query sequence in a Blast result

bpcs_uploader

百度pcs上传脚本

cheatsheets

Official Matplotlib cheat sheets

china-holiday-calender

**节假日、调休、补班日历，ICS格式，可供IPhone、Google Calender、Outlook等客户端订阅

coding-interview-university

A complete computer science study plan to become a software engineer.

coelho2021_gmgcv1

community-diversity

alpha and beta diversity

controllingcontaminants16s

doubanspider

豆瓣读书的爬虫

dowhy

DoWhy is a Python library for causal inference that supports explicit modeling and testing of causal assumptions. DoWhy is based on a unified language for causal inference, combining causal graphical models and potential outcomes frameworks.

easyamplicon

Easy Amplicon data analysis pipeline

easymicrobiome

easystats

:milky_way: The R easystats-project

environment-files

ibd-meta-analysis-data

imetaplot

iMeta teaches you to plot

lefse

LEfSe (Linear discriminant analysis Effect Size) determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.

lefse-1

magpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

megan-ce

MEGAN Community Edition

metaeuk

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

metagem

:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

metagenomics-vs-totalrnaseq

A repo for comparing metagenomics and total RNA-Seq, icnluding data-processing pipelines. Contains scripts to run pipelines on compute canada clusters or locally, as well as scripts for statistics.

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

microbiome_nf

Pipelines used in the lab.

microbiomemarker

R package for microbiome biomarker discovery

microbiomestatplot

Interpretation and visualization of microbiome charts

multi-metagenome

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes