James Ludwig's Projects
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Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Creating repository for uploading work which automates the creation of various molecular dynamics using packmol to initialize and proceeds to create gromacs ready files
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
R Package for Single Cell RNAseq Synthetic Data Simulation
This repository is created to be used in github_workflow workshop.
Estimate founders of HIV-1 infection using nucleotide sequences from very acute infection
K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data
Space for materials used during learning/researching machine learning methods
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
Profile for https://github.com/mopig
Analysis scripts, notebooks, and example files for MD simulations using the MARTINI force fields to study n-alcohols in model membranes
Proteomics Toolset for Integrative Data Analysis
A notebook working with Python and MySQL, using MySQL Connector.
Introduction to single-cell RNA-seq analysis
A repository for the different courses I have taken/am working on regarding SQL and queries I am writing for my own learning/projects
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