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Welcome to my Github, I'm James!๐Ÿ˜„

My career in statistics and chemistry has given me the opportunity to apply Data Science stratagies for peer reviewed science. I now work as a bioinformatics analyst with Fred Hutch!

Linkedin: jamesludwig

Portfolio

James' github stats

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James Ludwig's Projects

awesome-single-cell icon awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

batch-simulation-with-varied-composition icon batch-simulation-with-varied-composition

Creating repository for uploading work which automates the creation of various molecular dynamics using packmol to initialize and proceeds to create gromacs ready files

celda icon celda

Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

dropsim icon dropsim

R Package for Single Cell RNAseq Synthetic Data Simulation

hiv-founder-id icon hiv-founder-id

Estimate founders of HIV-1 infection using nucleotide sequences from very acute infection

knn-smoothing icon knn-smoothing

K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data

machine-learn-ing icon machine-learn-ing

Space for materials used during learning/researching machine learning methods

mdanalysis icon mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

mopig icon mopig

Profile for https://github.com/mopig

n_alchohol_martini icon n_alchohol_martini

Analysis scripts, notebooks, and example files for MD simulations using the MARTINI force fields to study n-alcohols in model membranes

protigy icon protigy

Proteomics Toolset for Integrative Data Analysis

python_sql icon python_sql

A notebook working with Python and MySQL, using MySQL Connector.

scrna-seq icon scrna-seq

Introduction to single-cell RNA-seq analysis

sql-adventures icon sql-adventures

A repository for the different courses I have taken/am working on regarding SQL and queries I am writing for my own learning/projects

tw93 icon tw93

Github ้ฆ–้กต่‡ชๅŠจไฟกๆฏๅทฅไฝœๆต

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