Comments (1)
Dear @jamesbangbang1126, thanks for using TrendCatcher! The ideal input for run_TrendCatcher function is the raw count table without batch effect. But if you need normalization or batch effect, you can check the source code of preprocess_TrendCatcher.R. Here we applied CPM normaliztion and ComBat_seq batch correction functions, then converted it back into integers.
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Related Issues (12)
- gss error Issue with three time point samples HOT 7
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- draw_TimeHeatmap_GO HOT 2
- guide for converting Seurat object to trendcatcher data? HOT 1
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- draw_TimeHeatmap_GO function HOT 4
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