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alternative-splicing

Investigating alternative splice events, their trans-acting factors and its effect on protein-interactions.

annotatecelltypes

Annotate celltypes from a reference. Input raw count data.

automation

Quick automation scripts for saving memory in brain

cancer-metastasis

Analysis of prostate tumours with metastatic tumours in patients. Part of STAT540 project.

chromatindynamics2020-analysis

Analysis corresponding to the paper "Dynamics of Chromatin Accessibility in Cortical Interneurons"

circadian4cseq

Circadian 4CSeq processed data and scripts. For plotting circadian mRNA expression across tissues, see https://github.com/jakeyeung/TissueCiradianAnalysis

cv

Curriculum vitae of Jake Yeung

diffusion-kernel

Using a diffusion kernel to analyze large networks.

gofunction

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GOFunction.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GOFunction.

gpjax

Gaussian processes in JAX fork.

jakeyeung.github.io

jakeyeung.github.io.old

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

jfuncs

Collection of R functions I have reuse often

jmax

Johns customizations to maximize emacs

lazyvelo

A poor man's implementation of velocity for uni-modal data

machine-learning

Machine learning in C++ and MATLAB

markup

The code we use to render README.your_favorite_markup

mirna-pipeline

Computational pipeline for analyzing miRNA

newproject

Test a vector of values for rhythmicity

pma

Penalized Multivariate Analysis

pyinfor

some of my codes on bioinformatics with python

repository_alexandre_krispin

Here are some templates that can be compiled with pdflatex, and some others with xelatex

rfunctions

Useful R functions I keep reusing over the years

ridge-regression-files

Files for ridge regression MARA

rmd-template

Beamer template for use in R-markdown.

scchic-analysis

scchic-functions

Functions used in downstream scchic analysis

scchix

Repository for scChIX

sleepdepanalysis

Statistical model, data, and functions for analyzing RNA-seq integrated with EEG-data to link sleep-wake behavior to gene expression dynamics.

sleepdepmodelselection

This is an R package to run time course models. Scripts are commented out but are used as examples for user for how to use these functions.