jakelever Goto Github PK

2019-11-21-stanford_medicine

2020-03-23-stanford

ab3p

Abbreviation definition dection library trained on PubMed abstracts

annotator

bigzenodo

Python tool for doing big uploads to Zenodo

bio2vec

Scripts to run word2vec on PubMed corpus files

bioc

Data structures and code to read/write BioC XML and Json.

bionlp.bcgsc.ca

Website for BioNLP research at the Genome Sciences Centre in Vancouver

biotext

Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!

biowordlists

Biomedical wordlists (of drugs, genes, etc) for several text mining projects

blah4

Code for BLAH4 hackathon project in Kashiwa, Japan - Knowledge discovery with relations

bookdown

Authoring Books and Technical Documents with R Markdown

bootstrap_lesson

Lesson materials for learning the bootstrap method

brew

:beer::penguin: The Homebrew package manager for Linux

brokenlinks

Tool for scanning a website for broken links

cancermine

Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer

civicmine

Text mining cancer biomarkers for the CIVIC database

corona-ml

Machine learning to text-mine coronavirus research for CoronaCentral.ai

corona-web

Website for viewing database of Coronavirus research at CoronaCentral.ai

countwords

Dummy text mining tool for testing ideas

docstringtest

Little package to test if docstrings are up-to-date in Python code

exampleproject

foodrelations

Nutrigenomics example text mining project using PubRunner

git-novice-es

Software Carpentry lección para control de versiones con Git

glasgow-ai4biomed.github.io

glasgowcs_labtest

Testing framework for online labs

gnbr

Tools to work with Global Network of Biomedical Relationships data

gputest

Basic test case for stressing a GPU

hg-novice

Software Carpentry introduction to Mercurial for novices.

homebrew-core

:beers::penguin: Core formulae for the Linuxbrew package manager