jaekyoung Goto Github PK

alphaflow

AlphaFold Meets Flow Matching for Generating Protein Ensembles

alphafold

Open source code for AlphaFold.

chroma

A generative model for programmable protein design

colabdesign

Making Protein Design accessible to all via Google Colab!

colabfold

Making Protein folding accessible to all!

deeplearningexamples

State-of-the-Art Deep Learning scripts organized by models - easy to train and deploy with reproducible accuracy and performance on enterprise-grade infrastructure.

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

dynamicbind

repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model

evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models

evopro

frame2seq

Structure-conditioned masked language modeling for protein sequence design

friendsdontletfriends

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

jaekyoung

Config files for my GitHub profile.

ligandmpnn

localcolabfold

ColabFold on your local PC

masif_seed

Masif seed paper repository

ml-from-scratch

Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep learning.

omegafold

OmegaFold Release Code

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

papers_for_protein_design_using_dl

List of papers about Proteins Design using Deep Learning

proteinmpnn

Code for the ProteinMPNN paper

rdkit

The official sources for the RDKit library

rf_diffusion_all_atom

Public RFDiffusionAA repo

rosettafold-all-atom

rvrsprot

the-incredible-pytorch

The Incredible PyTorch: a curated list of tutorials, papers, projects, communities and more relating to PyTorch.

thermompnn

GNN trained to predict changes in thermodynamic stability for protein point mutants

transformers-tutorials

This repository contains demos I made with the Transformers library by HuggingFace.