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Name: Ivan Sovic
Type: User
Location: Croatia, Singapore
Name: Ivan Sovic
Type: User
Location: Croatia, Singapore
An STL-like std::vector implementation which internally aligns the array to a desired number of bytes. Intended for e.g. SIMD purposes.
Framework for evaluating third and second generation sequencing alignments.
Assembly with RApid CONsensus from raw noisy long reads
Library for parsing command line arguments. Allows short and long arg names, specifying parameter groups and default values.
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Conda recipes for the bioconda channel.
C3PU is a 16-bit soft-core processor implemented in VHDL using Xilinx ISE Webpack.
cgmemtime measures the high-water RSS+CACHE memory usage of a process and its descendant processes.
Simple DP implementation of Needleman-Wunsch for generating CIGAR strings for sequence alignments.
Scripts to compute simple consensus (SNPs, insertions, deletions) from mpileup by majority vote.
A template for a threaded file monitoring daemon.
Find all significant local alignments between reads
Module to determine where repeats are and make soft-masks of said
C/C++ library for sequence alignment using edit distance based on Myers's "Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming"
An empty template makefile project.
E-value calculation with predefined BLAST parameters.
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
Subset of pitchfork
A gapped-spaced index with minimizer support.
An implementation of the Gotoh alignment algorithm.
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:
Scripts for testing and validating GraphMap.
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
isRes is a simple Python script for measuring resource consumption on Linux platforms.
Python scripts to left align indels in SAM files.
UCSC Nanopore
Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
Log of useful commands, tips and tricks.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.