Name: Fabio Zanini
Type: User
Company: UNSW Sydney
Bio: Physics, bioinformatics, virology, evolution, data science, and bioengineering. I usually code in Python, C++, and Javascript.
Twitter: fabiousername
Location: Sydney, Australia
Blog: https://fabilab.org
Fabio Zanini's Projects
WYSIWYG editor based on CKEditor — with completely rewritten UI
Web animations for didactical purposes
Kolmogorov Smirnov test on all genes between two AnnData objects
A bunch of odds and evens I wish anndata had.
Single cell gene expression data, averaged or subsampled by cell type
This repo contains tutorial drafts for atlasapprox API tutorial (python)
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Backup postdoc data
STAR mapping on slurm clusters in bags
Note taking application à la Evernote for Linux
BCR analysis for the Zanini Diamond collaboration
Generate and analyze beta coalescent trees
Project 6 for Bioinformatics II SS12 Uni-Tübingen
Official git repository for Biopython (converted from CVS)
A bunch of PkGBUILD files to install cellprofiler on arch
Cell type evolution
Cluster sequences in an alignment in with force fields
Compressed cell atlas across organs and organisms
Models of COVID-19 outbreak trajectories and hospital demand
Some work on dengue children
Just a little playing around with Facebook's ESM models.
just for fun
Software for exploration of gene expression data from single-cell RNA sequencing.
Just another custom split ergo-ortho ~40% keyboard
Ortho-ergo split keyboard variation on the TOTEM