Comments (1)
jaimergp
commented on June 18, 2024
mass should be an attribute of an Element object, which in this case is None. This may be due to a strange element in your topology that OpenMM could not recognize. You might workaround that by disabling the status reporters (progress, log), but other problems might arise along the way... so maybe try to fix the topology first.
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Related Issues (18)
- Periodic boundary conditions applied even if not requested HOT 1
- Automatic restart of simulation HOT 3
- Provide complete examples and tutorials HOT 3
- Random Velocities HOT 8
- CUDA error (700) HOT 3
- Box not detected in pdb file (Charmm) HOT 2
- ValueError: Illegal value for nonbonded method HOT 4
- Handling some Ctrl+C interruptions results in SystemError
- Python incompatibilities found HOT 1
- Dependency on the Anaconda-specific, non-upstream ruamel_yaml variant
- TypeError: unsupported operand type(s) for +: 'int' and 'Timedelta'
- Choosing a platform is not possible HOT 1
- Flush HOT 2
- unsupported operand type(s) for /: 'datetime.timedelta' and 'int' HOT 7
- Use Jinja to handle simple Python expressions in YAML input files HOT 2
- Error in using restraints? HOT 4
- Windows support HOT 11
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