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active_learning_cell_free

Scripts to perform active learning as described in the referenced article.

bayesiannetworks.jl

Implementation of Bayes Nets and accompanying data types in idiomatic Julia. Follows Daphne Kollers Probabilistic Graphical Models lecture.

conditional_density_estimation

Package implementing various parametric and nonparametric methods for conditional density estimation

covasim

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

datset

Datasets, posteriors, gradients for Python experiments with Monte Carlo/Optimization methods

distributions

Distributions related code for Python and numpy/scipy

distributions.jl

A Julia package for probability distributions and associated funtions.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

flax

Flax is a neural network library for JAX that is designed for flexibility.

gfl

A fast and flexible algorithm for solving the graph-fused lasso

gp_hypergraphs

Weighted Hypergraphs using GPs

gpjax

Gaussian processes in JAX.

gptchem

Chemical property prediction in the low data limit using GPT

gpy

Gaussian processes framework in python

gpytorch

A highly efficient and modular implementation of Gaussian Processes in PyTorch

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

julia

The Julia Language: A fresh approach to technical computing.

kameleon_rks

Random kitchen sink version of Kameleon MCMC

kcef

Kernel Conditional Exponential Family

kldivergence.jl

KL-divergence estimation in Julia

latex-proposal

The Proposal package for LaTeX

lecture_monte_carlo

mindresearchrepository

OJS plugins for running the Mind Research Repository

ml_sandbox

datasets and literature for the class 'mathematical aspects of machine learning'

modelselection

Code for nonparametric continuous latent variable priors / automatic dimensionality determination

numericextensions.jl

Julia extensions to provide high performance computational support

ojscmdimods

OJS_CMDI_MODS_plugin

paper-qa

LLM Chain for answering questions from documents with citations

paperpackageupload

progen

Fork of the ProGen models