Comments (2)
added cases to manage arrays of files and strings in executionInputs
:
WfExS-backend/wfexs_backend/cwl_engine.py
Lines 516 to 566 in 92d8dd1
from wfexs-backend.
Fixed along several commits. The issue arose when some input or output has more than one possible type. These cases are quite common in CWL, so it needed several refinements. Commits d3363a1 , 2062e81 , bc0da5f , 3a75c97 , 0f4c029 led to the proper handling of this use case
from wfexs-backend.
Related Issues (20)
- Add support for compact `drs` identifiers HOT 1
- Add support for `secondaryFiles` CWL HOT 3
- Add support to `dav` and `davs` schemes
- Cannot download content from ftp HOT 5
- TypeError: Multiple inheritance with NamedTuple is not supported HOT 3
- Parsing of Nextflow DSL2 workflows HOT 1
- Add support for swh permanent identifiers HOT 1
- Add several checks in the code to detect containers unavailable for the current hardware architecture
- Consider supporting other processor architectures through multiarch/qemu-user-static HOT 1
- Use pyinvoke and Fabric
- Fix dependency on newer versions of python-dxf HOT 1
- Introduce codemeta.json
- Secrets/secret inputs HOT 2
- Allow using as a staging source a Workflow Run RO-Crate
- Bug in path resolution in local config file HOT 3
- Error while running WfExS using a local workflow file/directory HOT 7
- PermissionError: [Errno 13] Permission denied: '/home/ansible/wfexs-backend-test/wf-cache' HOT 3
- Can't execute workflows using podman HOT 3
- `dot` dependency should be optional
- WfExS-backend init issues
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