Comments (2)
You should be able to just add any correctly sized numpy array into the volume fraction of any of the molecules/structures.
Is the idea to have a class that reads a (e.g. PNG) image and converts it into a numpy array?
The class should probably automatically scale the input image to the 3D volume in a clever way (customisable by flags)?
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The merge request just added shows just uses numpy arrays for the time being, but functionality for images is certainly possible for the future!
Indeed the idea is that the class will scale the images in multiple ways as wished by the user (I've already added quite a few but more are possible) and have used tags to help the user navigate them!
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Related Issues (20)
- Fix file_in_simpa_home test
- Implement a function for creating a generic tissue from optical parameters
- numpy operations in vessel structure not gpu supported
- MCXAdapterReflectance does not use anisotropy for simulation HOT 8
- Floating point rounding error for M1 Mac HOT 2
- Implement a Ring Illumination Geometry
- Path names and management
- Vessel Tree Generator Test Sometimes not working
- Option to only create specified property volumes in volume generation
- Benchmarking script HOT 1
- Revisit packaging and dependency management with poetry
- Extract reflectances from simulation as H x W x C
- Refactor SimulationModule HOT 2
- Add benchmarking to contributing.md HOT 1
- Interp2d() no longer available in SciPy 1.14.0
- TestPathManager test_instantiate_without_file fails with existing `path_config.env HOT 4
- Remove all append_fillers
- SPIE page produces timeout and pre-commit hook fails
- Manual test PointSourceReconstruction.py does not align with the other manual tests
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