imcf Goto Github PK

argolight_analysis_tool

Code to control the quality of images taken with our microscopes

auto-tx

Official GitHub mirror of the AutoTx intelligent background transfer service.

baysor

Bayesian Segmentation of Spatial Transcriptomics Data

bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

cecog

A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.

cellh5

CellH5 is an HDF5 data format for cell-based assays in high-throughput microscopy, which stores high-dimensional image data along with inter-object relations in graphs.

citrix-virtual-apps-desktops-sdk

citrix_collector

PowerShell based collector of Citrix metrics for Prometheus (creating a textfile for the windows_exporter).

confluenceps

Confluence REST API (including Cloud) via PowerShell

dvgrid

dvGrid creates an array of tiled microscope stage positions from a list of two positions for Deltavision Softworx.

easyxt-fiji

Commands and Classes for interfacing between Imaris and Fiji

example-script-collection

Example project demonstrating how to package ImageJ scripts into a single jar file

fiji

Fiji Is Just ImageJ

fiji-scripts

A wild collection of useful and partially broken scripts for Fiji and TrakEM2

fiji_stitching

Fiji's Stitching plugins reconstruct big images from tiled input images.

fish_quant

food_mining

Parsing information from extremely dirty stuff.

gc3pie

Python libraries and tools for running applications on diverse Grids and clusters

glasbey

Generate maximally distinct sets of colors

hrm

The Huygens Remote Manager is an open-source, efficient, multi-user web-based interface to the Huygens software by Scientific Volume Imaging for parallel batch deconvolutions.

hrm-omero

The HRM-OMERO connector

hrm-prometheus

A Python-based prometheus metrics collector for the Huygens Remote Manager (HRM).

hrm_containerization

:crystal_ball::microscope: Installation scripts for setting up the HRM in containers. :truck: :construction: :whale:

hrm_docs

Huygens Remote Manager documentation

hrm_installer

Set of bash scripts for the automated installation and setup of the Huygens Remote Manager.

hrm_tests

Infrastructure to test the Huygens Remote Manager.

hyperstackreg

An ImageJ / Fiji plugin for multi-channel Hyperstack alignment (registration)

i2k_st_data_analysis

iceimarisconnector

IceImarisConnector is a simple commodity class that eases communication between Bitplane Imaris (http://www.bitplane.com) and MATLAB (http://www.mathworks.com) using the Imaris XT interface (http://www.bitplane.com/go/products/imarisxt).

ij-guide

Contents and Typesetters of the ImageJ User Guide