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followers: 20.0 following: 6.0 repos: 48.0 gists: 2.0

Name: Luca Pireddu

Type: User

Luca Pireddu's Projects

ansible

Ansible is a radically simple IT automation platform that makes your applications and systems easier to deploy. Avoid writing scripts or custom code to deploy and update your applications — automate in a language that approaches plain English, using SSH, with no agents to install on remote systems. https://docs.ansible.com/ansible/

ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

backend

DeepHealth Toolkit back-end

bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

bioblend

A python library for interacting with CloudMan and Galaxy API

bioformats2raw

Bio-Formats image file format to raw format converter

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

charts

Helm Charts

cloud-deploy-kubenow

This repository contains scripts to manage the PhenoMeNal cloud CRE.

container-ecomet

Eco-Metabolomics container containing R and packages used in Ecology and Metabolomics

container-galaxy-k8s-runtime

First version of a PhenoMeNal runtime for Galaxy running inside a container orchestrator

container-mtblisa

Tools for querying over MetaboLights ISA metadata

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

docker-libs

docker-stacks

Ready-to-run Docker images containing Jupyter applications

eddl

European Distributed Deep Learning (EDDL) Library

flink-pipeline

galaxy

Data intensive science for everyone.

galaxy-kubernetes

Minimal setup required to run Galaxy under Kubernetes

grafana-backup-tool

Python codes to dump and backup Grafana using it's API

gtn

Training material for the Galaxy Smörgåsbord

hadoop-bam

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools.