missing module tifffile about ilastik-conda-recipes HOT 4 CLOSED

What is the output of conda info --root and conda list? And what if you install tifffile manually via conda install -c ilastik tifffile?

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Hi Stuart,
What is the output of conda info --root and conda list?
=> /home/fabian/miniconda

And what if you install tifffile manually via conda install -c
ilastik tifffile?
The following packages will be downloaded:

The following NEW packages will be INSTALLED:

tifffile: 0.4.1-1

The following packages will be UPDATED:
numpy: 1.9.3-py27_0 --> 1.10.1-py27_0

Proceed ([y]/n)?

It will prompt me to update the numpy version in the evironment. Not sure
whether this will break additional things. Do you think it is safe to do it
anyways?

Cheers,

Fabian

2015-10-22 13:33 GMT+02:00 Stuart Berg [email protected]:

What is the output of conda info --root and conda list? And what if you
install tifffile manually via conda install -c ilastik tifffile?

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from ilastik-conda-recipes.

It will prompt me to update the numpy version in the evironment. Not sure whether this will break additional things.

If it does break something, you can always start over with a fresh environment (it won't need to re-download all the packages again, so starting over will be quick).

Do you think it is safe to do it anyways?

It's hard to know without seeing the output from conda list, but I think it should be fine.

from ilastik-conda-recipes.

OK, the continuous integration server started having the same problem:
https://circleci.com/gh/ilastik/lazyflow/123

From what I can see conda is making an error in its dependency resolution. Conda is choosing to install the wrong build of our metapackage named ilastik-deps-pc-headless. Instead of choosing the latest build (build-number=2):

linux-64/ilastik-deps-pc-headless-1.1-np19py27_2.tar.bz2,

it is choosing an old build (build-number=0):

linux-64/ilastik-deps-pc-headless-1.1-np19py27_0.tar.bz2

As it turns out, the tifffile dependency is not listed in build 0, so that's why it's missing on your machine.

As a workaround, I've simply removed all old builds of our packages from the main ilastik channel (anaconda.org/ilastik). Now conda has only one choice when installing ilastik-deps-pc-headless.

Long story short: This should be fixed now.

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