ifiddes Goto Github PK

augustus

Genome annotation with AUGUSTUS

biocantor

bioconda-recipes

Conda recipes for the bioconda channel.

cactus_acceleration

cmps242-yelp-project

dipasm

fantastic-lamp

hal

Hierarchical Alignment Format

htsbox

My experimental tools on top of htslib. NOT OFFICIAL!!!

jobtree

Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.

kent

UCSC Genome Browser source tree. Stable branch: "beta".

luigi

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

mus_strain_cactus

Code, docs and experiments for the MSCA project.

nanopore

UCSC Nanopore

nanopore_kmer

kmer assessment

notch2nl_10x

notch2nl_cnv

notch2nl_copy_number_variation

notch2nl_kmer_debruijn

paratype-imputation

personal-scripts-code

pomegranate

Fast, flexible and easy to use probabilistic modelling in Python.

primate_paper

pycbio

pycbio

pyfasta

fast, memory-efficient, pythonic (and command-line) access to fasta sequence files

rc_files

bashrc, bash_profile, etc

sonlib

Small general purpose library for C and Python with focus on bioinformatics.

toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python