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biocommons.seqrepo

non-redundant, compressed, journalled, file-based storage for biological sequences

bioconda-recipes

Conda recipes for the bioconda channel.

cager

fork of https://bioconductor.org/packages/CAGEr/

charger

Characterization of Germline variants

chip-starr-seq

chippipes

Pipelines for ChIP-seq / CUT&RUN / CUT&Tag etc. analysis

clinvar_norm

dbc

an efficient and stable opensource DBMS

deeptools

Tools to process and analyze deep sequencing data.

docker_ucsc_genome_browser

UCSC Genome Browser Docker Image

docker_ucsc_genome_browser_db

UCSC Genome Browser MySQL Database Docker Image

e1071_parallel

Parallelized svm cross-validation in e1071 R package

easyc

An end to end HiC processing pipeline from raw sequencing reads to contact metrics

eccdna_rca_nanopore

eccDNA identification from nanopore long reads of rolling-circle amplicon

hgvs

Python library to parse, format, validate, normalize, and map sequence variants

jobs

A lightweight single-node Batch Job Queue

kubernetes-in-docker

Using docker containers to compose a local multi-node kubernetes cluster with docker in docker

libsvm_cuda

GPU accelerated libSVM grid search

libsvm_cv_parallel

Extend the libSVM with parallelized svm cross-validation

pblat

parallelized blat with multi-threads support

pblat-cluster

blat with cluster parallel hybrid computing support

rstudio_server_docker

Rstudio server in docker

snpsplit

Allele-specific alignment sorting

spp

SPP - R package for analysis of ChIP-seq and other functional sequencing data