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amipp

arterynetwork

A pipeline to extract vessels from MR images and perform analysis.

awesome-transformers-in-medical-imaging

A collection of resources on applications of Transformers in Medical Imaging.

cldice

eyepy

A python package to read, analyse and visualize OCT and fundus data form various sources.

global-local-transformer

Global-local Transformer for brain age prediction

ibrain-007.github.io

A minimal and beautiful Jekyll theme best for writing and note-taking.

itkthickness3d

An ITK module to compute 3D thickness

midl

Medical Imaging in Deep Learning

pytorch-cnn-visualizations

Pytorch implementation of convolutional neural network visualization techniques

pyvane

Python Vascular Network Analysis

ssl4mis

Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.

surface-distance

Library to compute surface distance based performance metrics for segmentation tasks.

tri-u-mt

uncertainty-toolbox

A python toolbox for predictive uncertainty quantification, calibration, metrics, and visualization

voxel2mesh

Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data