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Hi, thanks for pointing out this issue. I'll add some details in the tutorial.
The node_attribute.txt stores a matrix with rows representing cells and columns representing cell types. For example, assume you have 20 cell types in your dataset, you'll have 20 columns. For each cell (row), the column of its cell type will be 1 and other columns are set to 0s.
The graph_index.txt can be generated based on your image names listed in your ImageNameList.txt. The first image will have graph index of 0 stored in its graph_index.txt.
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Thank you,
And what about the _GraphLabel.txt file ?
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