Comments (2)
errors:
Exception ignored in: 'pysam.libcalignmentfile.AlignmentFile.dealloc'
FileNotFoundError: [Errno 2] No such file or directory
[E::bgzf_read_block] Invalid BGZF header at offset 19866824255
[E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes
from brie.
not very sure what the issue is but seems incompatibility in the .gz file from the error message. Possibly, you can turn your .gz file into plain text or gzip it instead of bgzip.
Yuanhua
from brie.
Related Issues (20)
- Mode 1 and gene features HOT 6
- `brie-count` fails with `KeyError '1'` HOT 1
- Brie-quant input HOT 2
- Brie-Count and Brie-Quant Errors HOT 7
- Other AS types counting, no output HOT 6
- the output of brie-count has not .h5ad file HOT 1
- the output of brie-count don't contain the .h5ad file HOT 3
- brie-quant uses all available resources HOT 1
- visualize sashimi plot with brie2 HOT 3
- multiple 10x samples integration to run brie-count HOT 1
- Brie-count Multiprocessing using only 1 core HOT 2
- some questions about psi distribution
- Brie-count error with paired end smart-seq2 data HOT 1
- confused about Psi_95CI HOT 1
- p values outputfile
- MXE chromosomecoordinates to gene_ids
- How to get the specific sites where differential splicing events occurs
- ELBO_gain and effect size HOT 1
- split cells into groups and run brie2 HOT 3
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