huangc Goto Github PK

bghandbook

Handbook for Brendel Group students, postdocs, and staff

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

conda

OS-agnostic, system-level binary package manager and ecosystem

del_overlap

discovardenovo

unofficial GIT tracking of the public release of DISCOVAR-denovo by Broad Institute's CRD team

dviz-course

Data visualization course material

findbysnp

find the best matching individual from population given a vcf file for unknown individual

galaxy

Data intensive science for everyone.

genepattern-notebook

Jupyter Notebook widgets for accessing GenePattern web services

genomics-workshop

haplovars

netsci-course

IU SICE Network Science course material

openag-cloud-v1

Google Cloud Platform services and database structure for the OpenAg™ backend.

openag-device-software

Software for running controlled grow environments on Linux / OSX machines and embedded linux devices such as Beaglebones and Raspberry Pis.

openag-electrical

Electrical design files developed in Eagle.

openag-mechanical

openag_brain

ROS package for controlling an OpenAg food computer

rice-by-qc

Notes on quality control for 8 rice genomes | Collaboration with Bing Yang at Iowa State University

rice3k

A bunch of stuff I am doing with the 3K rice genomes data

rnaseq

tregga

Targeted reference-guided genome assembly for comparative rice genomics

wgtalentarget

wgvarindel

This workflow is to find WG indels of genomic samples as compared to reference genome using NGS reads

wgvarsnp

This workflow is to to find WG SNPs and short INDELs of genomic samples as compared to reference genome using NGS reads