htgenomeanalysisunit Goto Github PK
Name: HT Genome Analysis Unit
Type: Organization
Bio: Genome Analysis Unit in the Population Genomic theme
Location: Italy
HT Genome Analysis Unit's Projects
csq_selector
Filter and select variant consequence annotations from snpEff, VEP or bcftools
enformer_variant_score
Support repo to compute and visualize the enformer variant / region scores
ffq
A tool to find sequencing data and metadata from public databases.
gwas_reports
Quarto template to generate results report from GWAS or rare variants summary stats
id_generator
Random ID generator from a pattern
labgurupython
Labguru API via Python
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
multiqc_sctk
MultiQC plugin to parse SCTK QC output as used at HT analysis group
nf-genotyping-qc
Pipeline and tutorial for simple genotyping QC
nf-pipeline-pgscatalog
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
nf-pipeline-regenie
GWAS and rare variants tests at high speed using regenie
nim-simpleargs
A simple command line argument parser with minimum dependencies
onek1k_query
small tool to query one1K1K data and retrieve gene expression stratified by genotype
quick_reads_stats
Quick collection of alignment metrics from BAM files
rsid_tools
Small utilities to play with dbSNP rsID: annotate rsID for a var or get position for an rsID
sc_2g_heatmap
Generate heatmap comparing 2 annotation labels in single-cell data
sce-vcf
Sample Contamination Estimate from VCF
sctranslator
This is a fork of scTranslator prediction model for HT
shiny_popgen
Shiny apps for teaching Population Genetics
singlecelltk
Interactively analyze single cell genomic data
ukb-phasing
A pipeline for phasing UK Biobank whole genome sequence data
useful_tips
Tips for various bioinformatic tasks
vuepress_doc_template
template to create Vuepress doc and automatic deploy
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